Doesn't matter if you use a 3.5" or 2.5" bay aslong as it got the mounting holes.
Skylake CPU's are all overclockable by the baseclock (usually 100mhz per multiplier) now, requires a specific bios and mobo (right now almost all MSI Z170 boards). If you really want to safe money on a tricky route I'd go for a 6400 and overclock it with the BCLK. Skylake offers you more cpu bound commands and instructions, native USB 3.1, more PCIe lanes and a lower power bill. Personally I'd never buy something "outdated" (Haswell isn't outdated in terms of shitty, but outdated in terms of there exist more advanced stuff for the same money).
Last edited by Mongius; Dec 26, 2015 at 01:29 PM.