So I've been getting notifications on the top right by my name that I have new private messages. When I click on Private messages and go to the page for them my new messages aren't showing up. If I go to my user control panel though I can access the new messages from there.

This has occurred with the last two PMs sent to me.

Do they appear in other browsers?

Ummmm, send me a PM and I'll check.

done. So what you're saying is it doesn't show up in listed messages or...? Where exactly does it now show up? Can we have a link to where youre trying to go?

Just in case nothing works, try this link
http://forum.toribash.com/index.php?nojs=1

Before doing it try with other browsers, your forum may get a little different if you access it, to reverse it back to normal just replace nojs=1 with nojs=0

Okay so it showed up when I switched to Safari, but its not showing up in Chrome, which is what I usually use.
And Lite, where I'm usually going is my inbox, where all my old PMs Received and Sent are stored.
http://forum.toribash.com/private.php

It doesn't list your pms there? that's weird. Try reinstalling chrome or cleaning it's configuration